## Bits and Pieces

10 février 2017

Often times, we take stuff for granted.  But while preparing to embark on a crazy project (description in French here and Google translation in English here), I wanted to benchmark the bit manipulation operations in both Squeak and Pharo, for the 32bit and 64bit images (I am on Windows so the 64bit VM is not available for testing yet but it’ll come!).  So essentially, it was just a test to compare the VM-Image-Environment combo!

To make a long story short, I was interested in testing the speed of 64bit operations on positive integers for my chess program. I quickly found some cases where LargePositiveInteger operations were more than 7-12 times slower than the SmallInteger equivalences and I became curious since it seemed like a lot.  After more testing and discussions (both offline and online), someone suggested that some LargePositiveInteger operations could possibly be slow because they were not inlined in the JIT.  It was then recommended that I override those methods in LargePositiveInteger (with primitives 34 to 37), thus shortcutting the default and slow methods in Integer (corresponding named primitives, primDigitBitAnd, primDigitBitOr, primDigitBitXorprimDigitBitShiftMagnitude in LargeIntegers module).  I immediately got a 2-3x speedup for LargePositiveInteger but…

Things have obviously changed in the Squeak 64bit image since some original methods (in class Integer) like #bitAnd: and #bitOr: are way faster than the overrides (in class LargePositiveInteger )!  Is it special code in the VM that checks for 32bit vs 64bit (more precisely, 30bit vs 60bit integers)?  Is it in the LargeIntegers module?

Here are 2 typical runs for Squeak 5.1 32bit (by the way, Pharo 32bit image performs similarly) and Squeak 5.1 64bit images  :

Squeak 5.1 32bit

```Number of #allMask: per second: 7.637M
Number of #anyMask: per second: 8.333M
Number of #bitAnd: per second: 17.877M
Number of #bitAnd2: per second: 42.105M
Method #bitAnd2: seems to work properly! Overide of #bitAnd: in LargeInteger works!
Number of #bitAt: per second: 12.075M
Number of #bitAt:put: per second: 6.287M
Number of #bitClear: per second: 6.737M
Number of #bitInvert per second: 5.536M
Number of #bitOr: per second: 15.764M
Number of #bitOr2: per second: 34.409M
Method #bitOr2: seems to work properly! Overide of #bitOr: in LargeInteger works!
Method #bitShift2: (left & right shifts) seems to work properly! Overide of #bitShift: in LargeInteger works!
Number of #bitXor: per second: 15.385M
Number of #bitXor2: per second: 34.043M
Method #bitXor2: seems to work properly! Overide of #bitXor: in LargeInteger works!
Number of #highBit per second: 12.451M
Number of #<< per second: 6.517M
Number of #bitLeftShift2: per second: 8.399M
Number of #lowBit per second: 10.702M
Number of #noMask: per second: 7.064M
Number of #>> per second: 7.323M
Number of #bitRightShift2: per second: 29.358M
```

Squeak 5.1 64bit

```Number of #allMask: per second: 36.782M
Number of #anyMask: per second: 41.026M
Number of #bitAnd: per second: 139.130M
Number of #bitAnd2: per second: 57.143M
Method #bitAnd2: seems to work properly! Overide of #bitAnd: in LargeInteger works!
Number of #bitAt: per second: 23.358M
Number of #bitAt:put: per second: 8.649M
Number of #bitClear: per second: 38.554M
Number of #bitInvert per second: 29.630M
Number of #bitOr: per second: 139.130M
Number of #bitOr2: per second: 58.182M
Method #bitOr2: seems to work properly! Overide of #bitOr: in LargeInteger works!
Method #bitShift2: (left & right shifts) seems to work properly! Overide of #bitShift: in LargeInteger works!
Number of #bitXor: per second: 55.172M
Number of #bitXor2: per second: 74.419M
Method #bitXor2: seems to work properly! Overide of #bitXor: in LargeInteger works!
Number of #highBit per second: 7.921M
Number of #<< per second: 10.127M
Number of #bitLeftShift2: per second: 12.800M
Number of #lowBit per second: 6.823M
Number of #noMask: per second: 39.024M
Number of #>> per second: 23.188M
Number of #bitRightShift2: per second: 56.140M
```

So now, I’m left with 2 questions :

1. Why exactly does the override work (in 32bit images)?
2. What changed so that things are different in Squeak 5.1 64bit image (overrides partially work)?

If you’re curious/interested, the code I have used to test is here.

Leave me a comment (or email) if you have an explanation!

To be continued…

Publicité

## BioSmalltalk

13 janvier 2013

La toute dernière version de BioSmalltalk est disponible ici !

Que ce soit pour Pharo ou Squeak, sur Windows ou sur Linux.  Pour ceux qui désirent un outil flexible, compréhensible, extensible et configurable  pour faire de la bio-informatique, c’est un must!

Des clients/API pour les bases de données BLAST, BioEntrez et FASTA (entre autres) sont déjà inclus dans BioSmalltalk.  Plusieurs  utilitaires pour parser des séquences génomiques, des fichiers CSV ou des fichiers XML sont également inclus.

Bref,  vous n’avez plus l’excuse de devoir recourir à des modules en Perl pour faire de la bio-informatique.  Qui plus est, Smalltalk est tellement plus cool!

Par ailleurs, le blogue  (en anglais) contient plusieurs exemples pratiques de l’utilisation de BioSmalltalk!

Amusez-vous!

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